PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_101790g0010
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB
Protein Properties Length: 245aa    MW: 27574 Da    PI: 8.4969
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_101790g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding483e-151461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WT+eEd +lv  ++++G g W++ ++  g+ R++k+c++rw +yl
   MA_101790g0010 14 KGTWTKEEDHRLVTHIRLHGEGGWRSLPKAAGLLRCGKSCRLRWINYL 61
                     799*****************************99************97 PP

2Myb_DNA-binding55.41.4e-1767111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++T+eEdel+++++   G++ W++Ia +++ gRt++++k++w+++
   MA_101790g0010  67 RGSFTEEEDELIIKLHSVVGNK-WSLIAGRLP-GRTDNEIKNYWNTH 111
                      89********************.*********.************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.3E-21664IPR009057Homeodomain-like
PROSITE profilePS5129414.652961IPR017930Myb domain
SuperFamilySSF466893.31E-2911108IPR009057Homeodomain-like
SMARTSM007172.1E-101363IPR001005SANT/Myb domain
PfamPF002491.3E-131461IPR001005SANT/Myb domain
CDDcd001672.30E-81661No hitNo description
PROSITE profilePS5129428.69762116IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.1E-2865116IPR009057Homeodomain-like
SMARTSM007175.0E-1766114IPR001005SANT/Myb domain
PfamPF002496.4E-1667111IPR001005SANT/Myb domain
CDDcd001671.44E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MGRSSCYEKA RTNKGTWTKE EDHRLVTHIR LHGEGGWRSL PKAAGLLRCG KSCRLRWINY  60
LRPDLKRGSF TEEEDELIIK LHSVVGNKWS LIAGRLPGRT DNEIKNYWNT HIKRKLLSKG  120
IDPQSHHPLG QPYNSNNIAV SRSLPDNEIP ALQNPRTPEI TDFFRHDRSE SSPIEPEALD  180
AEEHAELNLN LCMSLPSTSA PAANSPSSVD RTAVLNPTSG RGRLTAEMRE SMDNSVFVSS  240
PNWCN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-291311626128MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF0855950.0EF085595.1 Picea sitchensis clone WS0285_N09 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012462415.13e-83PREDICTED: transcription repressor MYB6-like
SwissprotQ9SZP12e-80MYB4_ARATH; Transcription repressor MYB4
TrEMBLA9NW871e-160A9NW87_PICSI; Putative uncharacterized protein
STRINGSi012585m1e-80(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.11e-79myb domain protein 4